Package: NBLDA
Type: Package
Title: Negative Binomial Linear Discriminant Analysis
Version: 1.0.1.9000
Date: 2022-02-21
Authors@R: c(person("Dincer", "Goksuluk", role = c("aut", "cre"), email = "dincergoksuluk@erciyes.edu.tr"),
  person("Gokmen", "Zararsiz", role = c("aut")),
  person("Selcuk", "Korkmaz", role = c("aut")),
  person(c("Ahmet", "Ergun"), "Karaagaoglu", role = c("ths")))
Description: We proposed a package for the classification task which
        uses Negative Binomial distribution within Linear Discriminant
        Analysis (NBLDA). It is an extension of the 'PoiClaClu' package
        to Negative Binomial distribution. The classification
        algorithms are based on the papers Dong et al. (2016, ISSN:
        1471-2105) and Witten, DM (2011, ISSN: 1932-6157) for NBLDA and
        PLDA, respectively. Although PLDA is a sparse algorithm and can
        be used for variable selection, the algorithm proposed by Dong
        et al. is not sparse. Therefore, it uses all variables in the
        classifier. Here, we extend Dong et al.'s algorithm to the
        sparse case by shrinking overdispersion towards 0 (Yu et al.,
        2013, ISSN: 1367-4803) and offset parameter towards 1 (as
        proposed by Witten DM, 2011). We support only the
        classification task with this version.
Imports: methods, stats, graphics
Suggests: knitr, PoiClaClu, sSeq
Depends: ggplot2
License: GPL(>=2)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
Collate: 'FindBestTransform.R' 'all_classes.R' 'all_generics.R'
        'control.R' 'copiedFromOtherPackages.R' 'generateCountData.R'
        'getShrinkedDispersions.R' 'helper_functions.R'
        'normalize_counts.R' 'package_and_supplementary.R'
        'plot.nblda.R' 'predict.nblda.R' 'trainNBLDA.R' 'zzz_methods.R'
Repository: https://dncr.r-universe.dev
Date/Publication: 2022-02-21 19:09:33 UTC
RemoteUrl: https://github.com/dncr/nblda
RemoteRef: HEAD
RemoteSha: 3b098934a8797dc9546483eb244960ae4f9ca084
NeedsCompilation: no
Packaged: 2026-10-08 10:01:36 UTC; root
Author: Dincer Goksuluk [aut, cre],
  Gokmen Zararsiz [aut],
  Selcuk Korkmaz [aut],
  Ahmet Ergun Karaagaoglu [ths]
Maintainer: Dincer Goksuluk <dincergoksuluk@erciyes.edu.tr>